Scopus İndeksli Yayınlar Koleksiyonu

Permanent URI for this collectionhttps://hdl.handle.net/20.500.12514/3596

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Automatic Detection of Brain Tumors With the Aid of Ensemble Deep Learning Architectures and Class Activation Map Indicators by Employing Magnetic Resonance Images
(Elsevier, 2024) Turk, Omer; Ozhan, Davut; Acar, Emrullah; Akinci, Tahir Cetin; Yilmaz, Musa; Türk, Ömer
Today, as in every life-threatening disease, early diagnosis of brain tumors plays a life-saving role. The brain tumor is formed by the transformation of brain cells from their normal structures into abnormal cell structures. These formed abnormal cells begin to form in masses in the brain regions. Nowadays, many different techniques are employed to detect these tumor masses, and the most common of these techniques is Magnetic Resonance Imaging (MRI). In this study, it is aimed to automatically detect brain tumors with the help of ensemble deep learning architectures (ResNet50, VGG19, InceptionV3 and MobileNet) and Class Activation Maps (CAMs) indicators by employing MRI images. The proposed system was implemented in three stages. In the first stage, it was determined whether there was a tumor in the MR images Tumor) were detected from MR images (Multi-class Approach). In the last stage, CAMs of each tumor group were created as an alternative tool to facilitate the work of specialists in tumor detection. The results showed that the overall accuracy of the binary approach was calculated as 100% on the ResNet50, InceptionV3 and MobileNet architectures, and 99.71% on the VGG19 architecture. Moreover, the accuracy values of 96.45% with ResNet50, 93.40% with VGG19, 85.03% with InceptionV3 and 89.34% with MobileNet architectures were obtained in the multi-class approach.
Diagnosis of schizophrenia based on transformation from EEG sub-bands to the image with deep learning architecture
(Springer Science and Business Media Deutschland GmbH, 2023) Türk, Ömer; Aldemir, Erdoğan; Acar, Emrullah; Ertuğrul, Ömer Faruk; Türk, Ömer
Electroencephalogram is a low-cost, non-invasive, and high-entropy signal and thus has huge potential for clinical diagnosis of neurological diseases and brain–computer interface applications. Schizophrenia is one of the most severe diseases that show behavioral manifestations that are easily uncovered by specialists. In this context, the electroencephalogram analysis becomes more important for the automatic diagnosis of schizophrenia disease in the clinical process. In this study, a deep learning architecture, namely ResNet, aims to classify schizophrenia is proposed. The proposed system transforms wavelet sub-bands of the electroencephalogram into two-dimensional image space, which is considered the main unique contribution of the study. Thus, the disease indicators and features included in images could be figured out. Moreover, a discussion on the class activation maps was made to give a wide perspective on the features related to the disease. The proposed system was implemented on a large-scale electroencephalogram database containing records from unhealthy and healthy patients in various phases. The ResNet was implemented in three modes to give a thorough perspective in terms of the metrics of the diagnosis accuracy. The proposed system achieves 92.94% diagnosis accuracy rate, and the result shows that the proposed transformation-based solution is owing to the features related to schizophrenia disease
Employing deep learning architectures for image-based automatic cataract diagnosis
(TÜBİTAK, 2021) Acar, Emrullah; Türk, Ömer; Ertuğrul, Ömer Faruk; Aldemir, Erdoğan; Türk, Ömer
Various eye diseases affect the quality of human life severely and ultimately may result in complete vision loss. Ocular diseases manifest themselves through mostly visual indicators in the early or mature stages of the disease by showing abnormalities in optics disc, fovea, or other descriptive anatomical structures of the eye. Cataract is among the most harmful diseases that affects millions of people and the leading cause of public vision impairment. It shows major visual symptoms that can be employed for early detection before the hypermature stage. Automatic diagnosis systems intend to assist ophthalmological experts by mitigating the burden of manual clinical decisions and on health care utilization. In this study, a diagnosis system based on color fundus images are addressed for cataract disease. Deep learning-based models were performed for the automatic identification of cataract diseases. Two pretrained robust architectures, namely VGGNet and DenseNet, were employed to detect abnormalities in descriptive parts of the human eye. The proposed system is implemented on a wide and unique dataset that includes diverse color retinal fundus images that are acquired comparatively in low-cost and common modality, which is considered a major contribution of the study. The dataset show symptoms of cataracts in different phases and represents the characteristics of the cataract. By the proposed system, dysfunction associated with cataracts could be identified in the early stage. The achievement of the proposed system is compared to various traditional and up-to-date classification systems. The proposed system achieves 97.94% diagnosis rate for cataract disease grading.
A Hybrid 2d Gaussian Filter and Deep Learning Approach With Visualization of Class Activation for Automatic Lung and Colon Cancer Diagnosis
(Sage Publications inc, 2024) Turk, Omer; Acar, Emrullah; Irmak, Emrah; Yilmaz, Musa; Bakis, Enes; Türk, Ömer
Cancer is a significant public health issue due to its high prevalence and lethality, particularly lung and colon cancers, which account for over a quarter of all cancer cases. This study aims to enhance the detection rate of lung and colon cancer by designing an automated diagnosis system. The system focuses on early detection through image pre-processing with a 2D Gaussian filter, while maintaining simplicity to minimize computational requirements and runtime. The study employs three Convolutional Neural Network (CNN) models-MobileNet, VGG16, and ResNet50-to diagnose five types of cancer: Colon Adenocarcinoma, Benign Colonic Tissue, Lung Adenocarcinoma, Benign Lung Tissue, and Lung Squamous Cell Carcinoma. A large dataset comprising 25 000 histopathological images is utilized. Additionally, the research addresses the need for safety levels in the model by using Class Activation Mapping (CAM) for explanatory purposes. Experimental results indicate that the proposed system achieves a high diagnostic accuracy of 99.38% for lung and colon cancers. This high performance underscores the effectiveness of the automated system in detecting these types of cancer. The findings from this study support the potential for early diagnosis of lung and colon cancers, which can facilitate timely therapeutic interventions and improve patient outcomes.
Identification of cotton and corn plant areas by employing deep transformer encoder approach and different time series satellite images: A case study in Diyarbakir, Turkey
(ScienceDirect, 2023) Türk, Ömer; Şimşek Bağcı, Reyhan; Acar, Emrullah; Türk, Ömer
It is very important to determine the crops in the agricultural field in a short time and accurately. Thanks to the satellite images obtained from remote sensing sensors, information can be obtained on many subjects such as the detection and development of agricultural products and annual product forecasting. In this study, it is aimed to automatically detect agricultural crops (corn and cotton) by using Sentinel-1 and Landsat-8 satellite image indexes via a new deep learning approach (Deep Transformer Encoder). This work was carried out in several stages, respectively. In the first stage, a pilot area was determined to obtain Sentinel-1 and Landsat-8 satellite images of agricultural crops used in this study. In the second stage, the coordinates of 100 sample points from this pilot area were taken with the help of GPS and these coordinates were then transferred to Sentinel-1 and Landsat-8 satellite images. In the next step, reflection and backscattering values were obtained from the pixels of the satellite images corresponding to the sample points of these agricultural crops. While creating the data sets of satellite images, the months of June, July, August and September for the years 2016–2021, when the development and harvesting times of agricultural products are close to each other, were preferred. The image data set used in the study consists of a total of 434 images for Sentinel-1 satellite and a total of 693 images for Landsat-8. At the last stage, the datasets obtained from different satellite images were evaluated in three different categories for crop identification with the aid of Deep Transformer Encoder approach. These are: (1-) Crop identification with only Sentinel-1 dataset, (2-) Crop identification only with Landsat-8 dataset, (3-) Crop identification with both Sentinel-1 and Landsat-8 datasets. The results showed that 85%, 95% and 87.5% accuracy values were obtained from the band parameters of Sentinel-1 dataset, Landsat-8 dataset and Sentinel-1&Landsat-8 datasets, respectively
Palmprint recognition system based on deep region of interest features with the aid of hybrid approach
(SpringerLink, 2023) Türk, Ömer; Çalışkan, Abidin; Acar, Emrullah; Ergen, Burhan; Türk, Ömer
Palmprint recognition system is a biometric technology, which is promising to have a high precision. This system has started to attract the attention of researchers, especially with the emergence of deep learning techniques in recent years. In this study, a deep learning and machine learning-based hybrid approach has been recommended to recognize palmprint images automatically via region of interest (ROI) features. The proposed work consists of several stages, respectively. In the first stage, the raw images have been collected from the PolyU database and preprocessing operations have been implemented in order to determine ROI areas. In the second stage, deep ROI features have been extracted from the preprocessed images with the aid of deep learning technique. In the last stage, the obtained deep features have been classified by employing a hybrid deep convolutional neural network and support vector machine models. Finally, it has been observed that the overall accuracy of the proposed system has achieved very successful results as 99.72% via hybrid approach. Moreover, very low execution time has been observed for whole process of the proposed system with 0.10 s.

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