Browsing by Author "Dervis, Sibel"

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Armillaria Species Causing Kiwifruit Vine Decline and Root Rot in Northeastern Türkiye: a Growing Concern for Kiwifruit Health
(Wiley, 2024) Turkkan, Muharrem; Bozoglu, Tugba; Dervis, Sibel; Erper, Ismail; Ozer, Goksel
Kiwifruit (Actinidia deliciosa) production in northeastern T & uuml;rkiye is facing an emerging threat from Armillaria root rot. Surveys conducted in August 2021 and 2022 revealed that 10.5%-17.5% of the 200-500 vines within each of 35 kiwifruit orchards in the Per & scedil;embe, G & uuml;lyal & imath; and Alt & imath;nordu districts of Ordu province exhibited symptoms of Armillaria root rot, including complete defoliation. Diseased plants exhibited diagnostic signs on their root collars and woody roots, including white mycelial fans, extensive wood rot and rhizomorphs. A single Armillaria isolate was obtained from each of the 35 symptomatic orchards. Molecular identification, employing DNA sequencing of the large subunit (LSU) region of rDNA, the translation elongation factor subunit 1-alpha (TEF1) gene and the second largest RNA polymerase II B-subunit (RPB2) gene, identified 20 isolates as Armillaria gallica and 15 as A. mellea. Phylogenetic analyses, based on TEF1 alignments, further supported the species identification with a 100% bootstrap value. To examine genetic diversity, start codon targeted (SCoT) marker 13 was used, successfully differentiating the two Armillaria species and revealing three distinct clades. Clades I and II comprised 15 and 5 isolates of A. gallica, respectively, while Clade III contained all 15 A. mellea isolates. Pathogenicity testing on kiwifruit seedlings (cv. Hayward) revealed the ability of both A. gallica and A. mellea isolates to induce disease. Rhizomorph-producing isolates in kiwifruit seedlings displayed high virulence, inducing severe leaf necrosis and seedling mortality, while isolates lacking these structures were non-pathogenic. This study identifies the first global instance of A. gallica causing kiwifruit root rot. This finding, along with the identification of A. mellea as a causal agent in the country, highlights the emerging threat of Armillaria root rot to kiwifruit production in the region.
First Report Of Colletotrichum Perseae Causing Anthracnose Disease of Avocado ( Persea Americana) in Türkiye
(Academic Press Ltd- Elsevier Science Ltd, 2024) Bozoglu, Tugba; Turkkan, Muharrem; Ozer, Goksel; Guney, Inci Guler; Dervis, Sibel
Colletotrichum-induced anthracnose is a major disease of avocado (Persea americana), causing significant losses in production worldwide. In 2023, a survey of avocado fruits in markets within the K & imath;z & imath;ltepe district of Mardin, T & uuml;rkiye, revealed symptoms of anthracnose, characterized by brown-black lesions and internal necrosis. To identify the causal agent, 20 symptomatic avocado fruits were collected and fungal isolates resembling Colletotrichum species were obtained. Morphological characterization, multilocus sequence analysis of the internal transcribed spacer (ITS), actin (act), the apn2-Mat1-2 intergenic spacer (ApMat), and calmodulin (cal) loci, and pathogenicity testing were performed for only two representative isolates (Pa01 and Pa02). These analyses identified the pathogen as Colletotrichum perseae. The isolates readily formed ascomata on all culture media tested, suggesting a high capacity for sexual reproduction. Pathogenicity tests confirmed that C. perseae caused characteristic dark, sunken anthracnose lesions on avocado fruits. This is the first report of C. perseae causing anthracnose in avocados in T & uuml;rkiye, expanding the known geographical distribution of this pathogen. The findings highlight the need for effective disease management strategies and further research to understand the pathogen's lifecycle, environmental conditions favoring infection, and potential for seedborne transmission.
First report of Neoscytalidium novaehollandiae on common sage (Salvia officinalis)
(Springer link, 2021) Dervis, Sibel; Guney, Inci Guler; Kosar, Islim; Bozoglu, Tugba; Ozer, Goksel
In June 2020, many plants exhibited symptoms of root rot and foliar blight in the experimental field of common sage in Sanliurfa province, Turkey. The pathogen was identified as Neoscytalidium novaehollandiae based on morphological characteristics and phylogenetic analysis of partial sequence of the transcription elongation factor 1-alpha gene and the internal transcribed spacer of rDNA. Koch's postulates were fulfilled by successful re-isolation of the pathogen from inoculated plants in the pathogenicity assay. To our best knowledge, this is the first report of N. novaehollandiae causing root rot and foliar blight of common sage worldwide.
Ganoderma Butt Rot of Hazelnut (corylus Avellana) Caused by ganoderma Adspersum in Türkiye
(Wiley, 2024) Turkkan, Muharrem; Dervis, Sibel; Ozgumus, Oezlem; Ozer, Goeksel
In September 2022, hazelnut trees in six orchards in the & Ccedil;ar & scedil;amba district of Samsun province, a major hazelnut production area in the Black Sea region of T & uuml;rkiye, showed symptoms of leaf yellowing, shoot dieback, decline, basal stem rot and the presence of brown bracket-like sessile basidiocarps. Approximately 5%-10% of hazelnut trees were affected, highlighting the significant impact of the disease. A comprehensive morphological analysis was conducted to characterize fungal isolates obtained from symptomatic tissues as G. adspersum. This analysis incorporated features observed in basidiomata from declining trees and those reproduced after isolates were cultivated on wheat grain for spawn production and grown on an oak sawdust-based substrate. Confirmation of identification was achieved through the utilization of the internal transcribed spacer (ITS), large subunit (LSU) and small subunit (SSU) loci, along with sequencing and subsequent phylogenetic analysis. The G. adspersum isolates generally exhibited no significant growth differences at similar temperatures but demonstrated enhanced growth at 30 degrees C, while growth was completely inhibited at 40 degrees C. Incompatible reactions between isolates confirmed that distinct genotypes were present, highlighting genetic diversity within the species. In the pathogenicity trials, employing a single infested wheat grain per inoculation at the wounded site, hazelnut suckers exhibited distinct brown discolouration surrounding the inoculation site following a 2.5-month incubation period. Significantly, lesions exceeding 3 cm in length were observed, providing clear evidence of vigorous pathogenic activity by G. adspersum. This study is the first report of G. adspersum causing butt rot in hazelnuts, underscoring the significance of this finding for hazelnut cultivation and providing a foundation for future research and disease management strategies.
Green Synthesis of pleurotus Eryngii-derived Nanomaterials for Phytopathogen Control
(Wiley-v C H verlag Gmbh, 2024) Acay, Hilal; Guney, Inci Guler; Yildirim, Ayfer; Dervis, Sibel; Dereli, Elif
Growing concerns over the human health and environmental impacts of conventional fungicides, coupled with the escalating challenge of microbial resistance, have fueled the search for sustainable biocontrol strategies against plant pathogens. This study reports, for the first time, the green synthesis and characterization of a novel, eco-friendly nanomaterial, designated Pleurotus eryngii-Lecithin-Chitosan Nanomaterial (PEELCN), derived from P. eryngii extract (PEE), lecithin (L), and chitosan (C). The structural attributes of PEELCN were elucidated using Fourier Transform Infrared Spectroscopy (FTIR), Scanning Electron Microscopy (SEM), Thermogravimetric Analysis (TGA), X-ray Diffraction (XRD), and zeta potential measurements, confirming the successful formation of a stable and uniform nanostructure. The antifungal activity of PEELCN, and PEE, was assessed against five economically important phytopathogenic fungi: Neoscytalidium dimidiatum, Alternaria alternata, Verticillium dahliae, Bipolaris sorokiniana, and Fusarium oxysporum. Both PEE and PEELCN exhibited significant inhibitory effects on the mycelial growth of V. dahliae, B. sorokiniana, and N. dimidiatum, with varying degrees of efficacy. The differential antifungal activity suggests a species-specific mode of action. The findings highlight the promising potential of PEELCN as a sustainable, biocompatible, and cost-effective nanofungicide for the management of plant diseases, with the potential for development into a commercially viable biofungicide for sustainable agriculture.
HOST SELECTIVE VIRULENCE, TEMPERATURE RESPONSE AND GENETIC DIVERSITY IN MACROPHOMINA PHASEOLINA ISOLATES FROM SESAME AND PEANUT IN SOUTHERN TURKEY
(PARLAR SCIENTIFIC PUBLICATIONS (P S P), 2018) Tok, Fatih Mehmet; Dervis, Sibel; Arslan, Mehmet
In this work, host specificity (comparing virulence levels on diverse hosts), temperature response as a physico-morphological characteristic, and genetic diversity of 40 M. phaseolina isolates from sesame and peanut plants with different geographic origins were evaluated. Sesame and peanut isolates of M. phaseolina performed different levels of virulence on maize, watermelon, melon, peanut, and soybean. The temperatures between 25 and 30 degrees C were the optimum temperatures for colony size of isolates from sesame and peanut. A temperature of 25 degrees C was optimal for only 26 isolates (65%), but 30 degrees C was optimal for 39 isolates (97.5%). UPGMA clustering of data indicated that the Sesame and peanut isolates displayed various levels of genetic similarity within a range of 0.79 to 1.0 similarity coefficient index in three major cluster groups. With a few exceptions, isolates from the same or close locations tended to group together.
Morphological, physiological, molecular, and pathogenic insights into the characterization of Phytophthora polonica from a novel host, hazelnut (Corylus avellana)
(Academic Press Ltd- Elsevier Science Ltd, 2024) Turkkan, Muharrem; Ozer, Goksel; Dervis, Sibel
Hazelnuts, constituting a significant global crop, hold paramount importance in Turkiye, contributing to approximately 71.14 % of the world's hazelnut cultivation area. In the summer of 2023, hazelnut trees in two orchards situated in the Altinordu district of Ordu province, within the Black Sea region of Turkiye, the largest producer and exporter of hazelnuts, exhibited symptoms of decline associated with root rot. Phytophthora sp. was consistently isolated from necrotic taproots, initiating an in-depth study to discern the causal agent behind the observed hazelnut decline. The species was identified as P. polonica by its distinctive morphological traits, including homothallic characteristics, amphigynous or paragynous antheridia, long nonbranching sporangiophores, and nonpapillate sporangia with internal proliferation. Multiple genetic markers (ITS, tub2, and COI) facilitated a clear differentiation of P. polonica from other Phytophthora species within Clade 9, supporting its classification within Subclade 9b. This investigation also evaluated the impact of diverse nutrient media (CA, V8A, and CMA), temperatures, and pH levels on the mycelial growth of P. polonica HPp-1 and HPp-2 isolates. The optimal conditions for maximal mycelial growth were determined through the D-optimal design of the Response Surface Method, revealing the significant influence of all factors on mycelial growth. The identified optimal conditions were at 26.09 degrees C, pH 5.12, with CMA as the nutrient medium. Validation experiments conducted under these optimal conditions unveiled mycelial growth of 7.24 +/- 0.15 mm day(-1) and 6.81 +/- 0.09 mm day(-1) for P. polonica HPp-1 and HPp-2 isolates, respectively, with an error of less than 5 %. Pathogenicity assessments confirmed P. polonica's virulence on hazelnuts, with distinct lesion development observed in twig inoculation, cut stem segments, and foliar tests. While no statistically significant difference was noted in lesion areas between HPp-1 and HPp-2 isolates in twig and stem segment assays, a statistical difference in leaf lesion areas (19.96 +/- 2.04 cm(2) and 9.16 +/- 3.43 cm(2)) emerged in foliar tests after only a 5-day incubation period, indicating their high susceptibility to the pathogen. This study is the first to report P. polonica as a hazelnut pathogen in Turkiye and around the world, highlighting the previously non-existent threat of Phytophthora root rot in hazelnuts, given the substantial lack of scientifically documented cases related to hazelnut root rot diseases. The quadratic model design employed in physiological analyses is reliable for optimizing mycelial growth and can serve as a guiding framework for similar investigations.
Neoscytalidium dimidiatum: A newly identified postharvest pathogen of pears and its implications for pome fruits
(Wiley, 2024) Dervis, Sibel; Zholdoshbekova, Sezim; Guney, Inci Guler; Ozer, Goksel
T & uuml;rkiye is a prominent contributor to pear and diverse pome fruit production. Pear fruit with unusual brown to black spots and rot symptoms observed in public marketplaces in Mardin province have raised concerns regarding postharvest fruit health. The consistent isolation of a fungus from these fruits revealed morphological features indicative of Neoscytalidium dimidiatum. Phylogenetic confirmation of its identity ensued through BLASTn searches targeting, the internal transcribed spacer (ITS) of ribosomal DNA, the partial translation elongation factor 1-alpha gene (tef1), and the partial beta-tubulin gene (tub2). Pathogenicity evaluations were conducted on common pome fruits, namely pears, apples, and quinces, unveiling the susceptibility of all examined fruits to postharvest infection by this emergent pathogen. Furthermore, an investigation was carried out to discern the pathogen's response to varying temperature ranges on pear fruits, revealing that the most pronounced lesions occurred at 30 degrees C, followed by 25 degrees C, 35 degrees C, and 20 degrees C. Conversely, no lesion development was observed at 10 degrees C, 15 degrees C, or 40 degrees C. To the best of our knowledge, this study represents the first report of N. dimidiatum as the etiological agent responsible for postharvest rot in pear fruit. The implications of these findings highlight the potential threat posed by this pathogen to pome fruits postharvest, especially in regions where cold storage facilities are not widely utilized, warranting increased vigilance and preventive measures.
New Detection Methods for Cryphonectria Hypovirus 1 (chv1) Through Sybr Green-Based Real-Time Pcr and Loop-Mediated Isothermal Amplification (lamp)
(Mdpi, 2024) Celik, Ali; Cakar, Deniz; Dervis, Sibel; Morca, Ali Ferhan; Simsek, Secil Akilli; Romon-Ochoa, Pedro; Ozer, Goksel
Some mycoviruses can be considered as effective biocontrol agents, mitigating the impact of phytopathogenic fungi and consequently reducing disease outbreaks while promoting plant health. Cryphonectria parasitica, the causal agent of chestnut blight and a highly destructive pathogen, experienced a notable decrease in its virulence with the identification of cryphonectria hypovirus 1 (CHV1), a naturally occurring biocontrol agent. In this study, two innovative diagnostic protocols designed for the accurate and efficient detection of CHV1 are introduced. The ORF A and ORF B regions of CHV1 are targeted by these techniques, which employ colorimetric loop-mediated isothermal amplification (LAMP) with 2 Colorimetric LAMP Master Mix and real-time quantitative PCR (qPCR) with SYBR Green chemistry, respectively. The LAMP assay presents a discernible color transition, changing from pink to yellow after a 35 min incubation period. Comparative analysis, when assessed against two established reverse transcription-PCR (RT-PCR) techniques, reveals a significant enhancement in sensitivity for both the LAMP approach, which offers a tenfold increase, and the qPCR method, which showcases a remarkable 100-fold sensitivity improvement. Throughout the comparison phase, it was evident that the RT-PCR, LAMP, and qPCR procedures displayed superior performance compared to the Bavendamm test, relying on phenol oxidase activity, effectively distinguishing hypovirulent strains. Consequently, this study introduces two pioneer diagnostic assays for highly sensitive CHV1 detection, representing a substantial advancement in the realm of CHV1 surveillance techniques. These methodologies hold significant promise for enhancing research endeavors in the domain of the biological control of C. parasitica.
New disease caused by Neoscytalidium dimidiatum devastates tomatoes (Solarium lycopersicum) in Turkey
(ELSEVIER SCI LTD, 2019) Turkolmez, Sahimerdan; Dervis, Sibel; Ciftci, Osman; Serce, Cigdem Ulubas; Dikilitas, Murat
A novel disease of tomato (Solarium lycopersicum L.) was observed in the Southeast Anatolia Region of Turkey. Symptoms were blight of all aerial parts of the plant, including stems, branches, leaves, petioles, flowers and fruits, defoliation, root rot, inner stem necrosis, and plant death. The disease was found in 13.9% of surveyed fields, with an incidence varying from 3% to nearly 75% (average 21.2%) of the plants in symptomatic fields. The average severity of blight on stem in fields with the symptomatic plant surveyed was 1.4%. A Botryosphaeriaceae species, identified as Neoscytalidium dimidiatum (Penz.) Crous & Slippers using morphological and cultural features, was consistently isolated from symptomatic roots, inner stems, and blighted leaves, shoots, stems, fruits and flowers. The partial nucleotide sequence data for three gene loci, including nuclear rDNA internal transcribed spacer (ITS), large subunit (LSU) genes and the translation elongation factor 1-alpha (TEF-1 alpha), confirmed the morphological identification. Furthermore, sequence data of actin genes from N. dimidiatwn was, for the first time, deposited to the GenBank. Koch's postulates were fulfilled by testing the susceptibility of different tomato tissues (leaves, stems, inner stems and roots of tomato seedlings, and detached tomato fruits and flowers) to N. dimidiatum inoculation. To our knowledge, this is the first report of N. dimidiatum on tomato.
Pathogen Identification And Resistance Screening Of Fusarium Basal Rot İn Taşköprü Garlic İn Türkiye
(Wiley, 2024) Polat, Zuhtu; Besirli, Gulay; Dervis, Sibel; Ozer, Goksel; Sezer, Sati Mehmet; Ipek, Mehmet
Fusarium basal rot (FBR), caused by Fusarium spp., is a significant threat to garlic production globally, including in T & uuml;rkiye, where the unique Ta & scedil;k & ouml;pr & uuml; garlic is highly valued. This study investigated the diversity and aggressiveness of 77 Fusarium isolates obtained from disease surveys of FBR in Ta & scedil;k & ouml;pr & uuml; garlic and evaluated the yield and resistance of 20 garlic accessions, including 18 local landraces, the locally developed 'Ta & scedil;k & ouml;pr & uuml; 56', and the commercial Chinese variety 'ASCG'. Molecular identification using translation elongation factor 1-alpha (TEF1) and second largest RNA polymerase II B-subunit (RPB2) genes revealed F. oxysporum (67.5%) as the dominant species, followed by F. proliferatum (15.6%), F. solani (9.1%), F. redolens (5.2%) and F. clavum (2.6%), respectively. All isolates were pathogenic, but aggressiveness varied, with F. solani being the most aggressive, followed by F. redolens and F. oxysporum. While 'ASCG' exhibited the highest yield (3.15 ton/ha), it was highly susceptible to FBR (DSI = 97.50%). Conversely, the landrace ASTK2 displayed the highest resistance (DSI = 53.13%), but lower yield. Promisingly, several Ta & scedil;k & ouml;pr & uuml; landraces, such as ASTK6 and ASTK13, demonstrated both moderate resistance and promising yield potential. Surprisingly, 'Ta & scedil;k & ouml;pr & uuml; 56', despite being a locally developed variety, exhibited high susceptibility to FBR (DSI = 93.75%) and did not outperform many landraces in terms of yield. This study provides the first reports of F. redolens and F. clavum infecting garlic in T & uuml;rkiye, and the first molecular characterisation of F. solani as a garlic pathogen in the country, highlighting the potential of local landraces for breeding FBR-resistant, high-yielding cultivars.